The impact of microRNAs on protein output

MicroRNAs are endogenous approximately 23-nucleotide RNAs that can pair to sites in the messenger RNAs of protein-coding genes to downregulate the expression from these messages. MicroRNAs are known to influence the evolution and stability of many mRNAs, but their global impact on protein output had not been examined. Here we use quantitative mass spectrometry to measure the response of thousands of proteins after introducing microRNAs into cultured cells and after deleting mir-223 in mouse neutrophils. The identities of the responsive proteins indicate that targeting is primarily through seed-matched sites located within favourable predicted contexts in 3' untranslated regions. Hundreds of genes were directly repressed, albeit each to a modest degree, by individual microRNAs. Although some targets were repressed without detectable changes in mRNA levels, those translationally repressed by more than a third also displayed detectable mRNA destabilization, and, for the more highly repressed targets, mRNA destabilization usually comprised the major component of repression. The impact of microRNAs on the proteome indicated that for most interactions microRNAs act as rheostats to make fine-scale adjustments to protein output.     

A new genus and species of the termitophilous Neotropical Hybosorinae (Coleoptera: Scarabaeoidea: Hybosoridae) associated with Cornitermes (Isoptera: Termitidae) in the Cerrado ecoregion in Brazil

The new hybosorine genus Taisia Frolov, Ocampo, Akhmetova et Vaz-de-Mello, gen. nov. is described from T. cornitermitis Frolov, Ocampo, Akhmetova et Vaz-de-Mello, sp. nov. from Mato Grosso State, Brazil. Taisia gen. nov. can be easily distinguished from the rest of the Neotropical Hybosorinae genera by the following characters: mandibular teeth long and robust; pronotum with serrate lateral margins; scutellum with two deep rectangular fossae basally; and metatibial apex protruding. Males of T. cornitermitis sp. nov. differ in having feather-like setae on the three basal tarsomeres of meso- and protarsi. The new taxon is associated with termites Cornitermes cf. bequaerti Emerson, 1952.

www.zoobank.org/urn:lsid:zoobank.org:pub:439DDABB-EBC2-4870-AA05-76ADC3BDB7D9     

Common variants at 12q15 and 12q24 are associated with infant head circumference

To identify genetic variants associated with head circumference in infancy, we performed a meta-analysis of seven genome-wide association studies (GWAS) (N = 10,768 individuals of European ancestry enrolled in pregnancy and/or birth cohorts) and followed up three lead signals in six replication studies (combined N = 19,089). rs7980687 on chromosome 12q24 (P = 8.1 × 10(-9)) and rs1042725 on chromosome 12q15 (P = 2.8 × 10(-10)) were robustly associated with head circumference in infancy. Although these loci have previously been associated with adult height, their effects on infant head circumference were largely independent of height (P = 3.8 × 10(-7) for rs7980687 and P = 1.3 × 10(-7) for rs1042725 after adjustment for infant height). A third signal, rs11655470 on chromosome 17q21, showed suggestive evidence of association with head circumference (P = 3.9 × 10(-6)). SNPs correlated to the 17q21 signal have shown genome-wide association with adult intracranial volume, Parkinson's disease and other neurodegenerative diseases, indicating that a common genetic variant in this region might link early brain growth with neurological disease in later life.     

Chromosomal relationships among three species of jackrabbits ( Lepus : Leporidae) from Mexico

We studied differentially stained karyotypes of the leporids Lepus californicus, L. callotis, and L. flavigularis and described their banding patterns of euchromatin to decide whether results fit expectations of chromosomal rearrangements leading to the karyotypic evolution ancestral of the L. californicus--L. callotis--L. flavigularis lineage. Results confirmed previous findings on numbers of chromosomes (2 n 's) and fundamental numbers (FNs; except for L. californicus ). Homologous G-banding patterns allowed identification of chromosome rearrangements such as pericentric inversions and addition and deletion of euchromatin. Chromosomal rearrangements that we deduced mostly support hypotheses on karyotypic changes in the chromosomal evolution of the Lepus ancestral lineage that we examined. The karyotypic pattern coincides with patterns of geographic variation and distribution of the species examined.     

Diet and the evolution of human amylase gene copy number variation

Starch consumption is a prominent characteristic of agricultural societies and hunter-gatherers in arid environments. In contrast, rainforest and circum-arctic hunter-gatherers and some pastoralists consume much less starch. This behavioral variation raises the possibility that different selective pressures have acted on amylase, the enzyme responsible for starch hydrolysis. We found that copy number of the salivary amylase gene (AMY1) is correlated positively with salivary amylase protein level and that individuals from populations with high-starch diets have, on average, more AMY1 copies than those with traditionally low-starch diets. Comparisons with other loci in a subset of these populations suggest that the extent of AMY1 copy number differentiation is highly unusual. This example of positive selection on a copy number-variable gene is, to our knowledge, one of the first discovered in the human genome. Higher AMY1 copy numbers and protein levels probably improve the digestion of starchy foods and may buffer against the fitness-reducing effects of intestinal disease.